RnoEX6044518 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57226409-57241293:+
Coord C1 exon
chr13:57226409-57226488
Coord A exon
chr13:57229083-57229182
Coord C2 exon
chr13:57241245-57241293
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGCTTGCTTGAAGGTC
3' ss Score
9.03
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGTTCAAGTCGAATTCTACATGAATGAAAACACATTTAAAGAGAGATTAAAGTTGTTTTTCATAAAAAACCAGCGATCAA
Seq A exon
GTCTAAGAATCCGCTTGTTCAACTTTTCCCTCAAATTGTTAAGCTGTTTGTTATACATTATCCGTGTGTTGCTTGAGAAACCTTCACAGGGAAATGATTG
Seq C2 exon
GTCTCACATATTTTGGGTTAACAGAAGCCTGCCTTTATGGGGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'1-4,'1-2,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCAAGTCGAATTCTACATGAA
R:
CCCCATAAAGGCAGGCTTCTG
Band lengths:
122-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]