GgaEX1031358 @ galGal4
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2708147-2717220:+
Coord C1 exon
chr8:2708147-2708226
Coord A exon
chr8:2712762-2712861
Coord C2 exon
chr8:2717164-2717220
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCCTTTTAACATAGGTC
3' ss Score
8.21
5' ss Seq
ATGGTAGTA
5' ss Score
0.55
Exon sequences
Seq C1 exon
GGTGCAAGTTGAATTCTATATGAATGAAAACACATTTAAAGAGAGACTAAAACTCTTCTTCATCAAAAACCAAAGATCAA
Seq A exon
GTCTGAGAATACGGTTATTCAATTTTTCGCTTAAGCTACTAAGCTGTTTCTTATACATAATTCGTGTGCTCCTGGATGATCCTACACAAGGACATGGATG
Seq C2 exon
TAAGGAATTAAACCGGGATTGTTACAATCAAAATTACACACCCGGAACAATTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAAGTTGAATTCTATATGAATG
R:
CAATCAATTGTTCCGGGTGTGT
Band lengths:
137-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]