DreEX6025902 @ danRer10
Exon Skipping
Gene
ENSDARG00000075812 | kcnt2
Description
potassium channel, subfamily T, member 2 [Source:ZFIN;Acc:ZDB-GENE-130530-783]
Coordinates
chr2:12294361-12296119:-
Coord C1 exon
chr2:12296058-12296119
Coord A exon
chr2:12295688-12295784
Coord C2 exon
chr2:12294361-12294402
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACACTATTTGTACTCCTCAGGTC
3' ss Score
8.71
5' ss Seq
ATGGTAGAT
5' ss Score
3.06
Exon sequences
Seq C1 exon
TGTCAAAGAAAGTAGTTTCAAAGAACGTCTCCAGTGGTACTTGATCAAAAACCAACGATCAA
Seq A exon
GTCTCAGTGTGAGAGTGTTTTATCTGTCACTCAAGGTGTTGAGCTGTATTTTGTATGTATCCAGAGTGCTGACTGACTGTAAACATCAGACACAATG
Seq C2 exon
CTCAAGCCATCACGGTAACTATACCCTGCTTGAAATCGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075812-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAAGAAAGTAGTTTCAAAGAACG
R:
CAGTCGATTTCAAGCAGGGTA
Band lengths:
103-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]