HsaEX0033119 @ hg38
Exon Skipping
Gene
ENSG00000107147 | KCNT1
Description
potassium sodium-activated channel subfamily T member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr9:135750942-135753993:+
Coord C1 exon
chr9:135750942-135751041
Coord A exon
chr9:135752379-135752457
Coord C2 exon
chr9:135753937-135753993
Length
79 bp
Sequences
Splice sites
3' ss Seq
AACCTCCTGTCTTTGTCTAGGTC
3' ss Score
10.27
5' ss Seq
TAGGTCACT
5' ss Score
-0.15
Exon sequences
Seq C1 exon
GCCTGAGGATCCGGCTGTTCAACTTCTCCCTGAAGCTGCTCACCTGCCTGCTCTACATTGTGCGCGTCCTGCTCGATGACCCGGCCCTGGGCATCGGATG
Seq A exon
GTCAGAAGAGGGCAGAACCCACTAGGAGAGTTTGAGAAGGAGAACTGGGCCCTGACTGACTCTCAAGCTACTTTCCTAG
Seq C2 exon
CTGGGGCTGCCCAAAGCAGAACTACTCCTTCAATGACTCGTCCTCCGAGATCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147_MULTIEX2-3/4=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.421 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGATCCGGCTGTTCAAC
R:
CAGTTGATCTCGGAGGACG
Band lengths:
155-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development