HsaEX0038095 @ hg19
Exon Skipping
Gene
ENSG00000166987 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:20445]
Coordinates
chr12:57916527-57918199:+
Coord C1 exon
chr12:57916527-57916794
Coord A exon
chr12:57917812-57917875
Coord C2 exon
chr12:57918063-57918199
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTACTTGCGTTGCAGGTG
3' ss Score
10.61
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GCGGCTGCGGCAGCGACGGCGGCGGCGGCAGCGGCAGCAGCCTGCGCAGTGCCTTCTGGGAACGGAATCCCCAGGGCTGCCCCTGGCCCCCATGGCGCATGCGCGGGAGGCCGCTCGGTGATCCGCGGCGGCGGCAGCGGCGCTTCCTGCTAGGACCGGCCGGGGCCGTACCGGAGGCTCGGGCTCCACCGACCCTCCTCCCACCCCCTCCCACTCACCCTCTGGGCCGCGACTGCGCAGGGCGGGGCCGGCCGAACCATGGGCCGCG
Seq A exon
GTGTGGGCTAAGCTGGTGGCCCCGGCTTTAGACTGGACCCCACAATGTTTGCAGAGATGTTCAG
Seq C2 exon
GCACGCGGGAGCTGATTACACACAATGAATGGGGGCAATGAGAGCAGTGGAGCAGACAGAGCTGGGGGCCCTGTGGCCACATCTGTCCCCATCGGCTGGCAGCGCTGTGTGCGAGAGGGTGCTGTGCTCTACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166987-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.447
Domain overlap (PFAM):
C1:
NA
A:
PF0142914=MBD=PU(61.9=68.4)
C2:
PF0142914=MBD=PU(35.2=65.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCGACCCTCCTCC
R:
TGTCTGCTCCACTGCTCTCAT
Band lengths:
143-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)