RnoEX0052993 @ rn6
Exon Skipping
Gene
ENSRNOG00000006209 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:RGD Symbol;Acc:1311050]
Coordinates
chr7:70576859-70579948:-
Coord C1 exon
chr7:70578166-70579948
Coord A exon
chr7:70577102-70577165
Coord C2 exon
chr7:70576859-70576995
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTTGTGTTGCAGGTG
3' ss Score
12.17
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GGGATTGGCCACCAGTGGCCTGGGAAGAGGCCCAGATCCTTCCGCGGAGGACGGGGGGGGGCCGCGTGGGGTGTTTGTTCTCTTGGGGATTAATGGGGGGTTGTGGGGGAGGGGTAGGCGCGCTCCCGCATGCGCACTGCGTCCCCTCCTGTTGGCTCGCTGCTGTCCGCTGGGCGGGGCCCGGCCCCGCCCCTCTCCCGTCCGGGCAGCGGCGGCGGCGGCGGCGGCTGCGGCGGTGGCGGCGGCAGCGACGGCGGCGGCGGTAGCAGTCTGCGCGGTGCCTTCTGGGAACGGAATCCCCAGGGCTGCCCCTGGCCCCTATGGCGCATGCGCGGGAGGCCGCTCGGTGATCCGCGGCGGCGGCGGCGGCGGCGCTTCCTGCTAAGACCGGCCGGGGCCGTACCGGAGGCTCGGGCTCCACCGACCCACCTCCCACCCCCTCCCACTCACCCTCTGGGCCGCGACTGCGCAGGGCGGGGCCAGCCGAACCATGGGCCGCG
Seq A exon
GTGTGGGCTAAGCTGGTGGCCCCGGCTTTAGAGTGGACCCCACAATGTTTGCAGAGATGTTCAG
Seq C2 exon
GCACAAGGGAGCTGATCGCACACAATGAATGGAGGGAATGAGAGCAGTGCAGCAGACAGAGCCGGGGGCCCTGCGGCCACGGCTGTCCCCATCGGGTGGCAGCGCTGTGTACGAGAAGGTGCTGTGTACTATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006209_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.395
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0142914=MBD=PU(35.2=65.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCGACCCACCTCC
R:
GTCTGCTGCACTGCTCTCATT
Band lengths:
142-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]