MmuEX0028087 @ mm10
Exon Skipping
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:127287396-127288890:-
Coord C1 exon
chr10:127288709-127288890
Coord A exon
chr10:127287627-127287690
Coord C2 exon
chr10:127287396-127287538
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTCCTTGTATTGCAGGTG
3' ss Score
11.61
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
CTATGGCGCATGCGCGGGAGGCCGCTCGGTGATCCGCGGCGGCGGCGGCGGCGGCGCTTCCTGCTAAGACCGGCCGGGGCCGTACCGGAGGCTCGGGCTCCACCGACCCACCTCCCACCCCCTCCCACTCACCCTCTGGGCCGCGACTGCGCAGGGCGGGGCCAGCCGAACCATGGGCCGCG
Seq A exon
GTGTGGGCTAAGCTGGTGGCCCCGGCTTTAGACTGGATCCCACAATGTTTGCAGAGATGTTCAG
Seq C2 exon
GCACAGGGGAGCTCATCACACACAATGAATGGAGACAATGCGAGCAGTGCAGCAGACAGAGCTGGGGGCCCTGCCGCCACGCCTGTCCCCATCCCCATCGGGTGGCAACGCTGTGTGCGAGAAGGTGCTGTGTACTATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.425 C2=0.425
Domain overlap (PFAM):
C1:
NA
A:
PF0142914=MBD=PU(32.9=57.5)
C2:
PF0142914=MBD=PU(33.3=57.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCGACCCACCTCC
R:
CACTGCTCGCATTGTCTCCAT
Band lengths:
134-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types