HsaEX0040061 @ hg38
Exon Skipping
Gene
ENSG00000011028 | MRC2
Description
mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr17:62688852-62689760:+
Coord C1 exon
chr17:62688852-62688960
Coord A exon
chr17:62689371-62689437
Coord C2 exon
chr17:62689522-62689760
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGTATTATTAATAACAACAGGGC
3' ss Score
3.52
5' ss Seq
CTGGTGTGC
5' ss Score
3.46
Exon sequences
Seq C1 exon
ACCAGCTGTGCAGTGGTCCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGACGATCGGAGCTGCACGGAGGAGACCCATGGCTTCATCTGCCAGAAGGGCACGG
Seq A exon
GGCTGACACCTACCAAGCCTTGGTCTGGGCCAAGCGCCGAGTCTGGTGGAGACCGGGTCTTTGCCTG
Seq C2 exon
ACCCCTCCCTGAGCCCGTCCCCAGCAGCGCTGCCCCCCGCCCCGGGCACTGAGCTCTCCTACCTCAACGGCACCTTCCGGCTGCTTCAGAAGCCGCTGCGCTGGCACGATGCCCTCCTGCTGTGTGAGAGCCGCAATGCCAGCCTGGCCTACGTGCCCGACCCCTACACCCAGGCCTTCCTCACGCAGGCTGCCCGAGGGCTGCGCACGCCGCTCTGGATTGGGCTGGCTGGCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011028-'53-53,'53-52,54-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.387 A=0.864 C2=0.100
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(28.2=89.2)
A:
NA
C2:
PF0005916=Lectin_C=PU(47.1=61.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCCATGGCTTCATCTGC
R:
ATTGCGGCTCTCACACAGC
Band lengths:
171-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development