DreEX6016099 @ danRer10
Exon Skipping
Gene
ENSDARG00000078135 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr3:19650388-19657612:+
Coord C1 exon
chr3:19650388-19650496
Coord A exon
chr3:19654132-19654370
Coord C2 exon
chr3:19657447-19657612
Length
239 bp
Sequences
Splice sites
3' ss Seq
CTCCATATATGTGTTTCCAGACC
3' ss Score
6.97
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGTAACTGTGTTTTGCTTCTGCATGGTAGTCCTCAGCGGATTACAGGCATGTGGGCGTCTCGCAGGTGTGATGCAGAGAAACATGGCTTCATCTGCATGAAGGATAAAG
Seq A exon
ACCCTGCCCTGTCACCTGGCGTGGATCGTCTTCCCCCATCATTAGATGGTCCTTTAGAGTTTGATGGTGTTCAGTACCGGATCCTGCAGAAGCGTCTGGATTGGCATTCAGCTCTGCAAGTGTGTGAATCAGTCAACGGGACACTGGCTGCTGTACGGGAACCTCGGCAGAATGCTTACCTCACCCTTCTCCTCAGCACTCTCCGGAAACCTGCCTGGATTGCTCTACACAATGAAGGG
Seq C2 exon
GGGCGGAGCTACTCGTGGTTGGGTGAAGAGGAGATCACATTCAGTGACTGGCGGGACGGAGAGCCCAATCAGATGTACGGTTGTGGTCACATGATCACTGAGGGCCAGTGGACTGTGGCTGCTTGCAATTCAAAATTAAATGCAGCCATTTGTGAAATGAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078135-'20-27,'20-26,21-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(28.7=89.2)
A:
PF0005916=Lectin_C=PU(47.6=61.2)
C2:
PF0005916=Lectin_C=PD(50.5=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACTGTGTTTTGCTTCTGC
R:
TGTTCATTTCACAAATGGCTGCA
Band lengths:
272-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]