BtaEX6089456 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015739 | MRC2
Description
Bos taurus mannose receptor, C type 2 (MRC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192670]
Coordinates
chr19:47743719-47744861:+
Coord C1 exon
chr19:47743719-47743827
Coord A exon
chr19:47744318-47744556
Coord C2 exon
chr19:47744693-47744861
Length
239 bp
Sequences
Splice sites
3' ss Seq
TCCTGCCCCCTTCCCTGTAGACC
3' ss Score
10.38
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ACCAGCTGTGCCGTGGTCCTGCATAGCCCCTCAACCCACTTCACTGGCCGCTGGGATGACCGGAGCTGTGCAGAGGAGACCCATGGCTTCATCTGCCAGAAGGCCACGG
Seq A exon
ACCCCTCCCTGAGCCCATCCCCAGCAGCGTCGCCCCCTGCCCCGGGCGCTGAGCTCTCCTACCTCAACGGCACCTTCCGGCTGCTGCAGAAGCCGCTGCGCTGGCACGACGCCCTGTTGCTGTGTGAGAGCCGAAATGCCAGCCTGGCGCACGTGCTTGACCCCTACACCCAGGCCTTCCTCACTCAGGCCGCCCGAGGGCTGCGCACGCCACTCTGGATTGGGCTGGCCAGTGAGGAG
Seq C2 exon
GGCTCCCGGCGGTACTCTTGGGTCTCGGAGGAGCCGCTGAGCTACGTGAGCTGGCAGGACGGGGAGCCCCAGCACCCCGGGGGCTGCGCCTACGTGGACACGGATGGTGCCTGGCGCACCACCAGCTGTGACACCAAGTTGCAGGGTGCTGTGTGTGGAGTTCACGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015739-'22-27,'22-25,23-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.163 C2=0.053
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(28.2=89.2)
A:
PF0005916=Lectin_C=PU(47.1=61.2)
C2:
PF0005916=Lectin_C=PD(51.0=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGCTGTGCCGTGGTC
R:
CCGTGAACTCCACACACAGC
Band lengths:
276-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]