RnoEX0055558 @ rn6
Exon Skipping
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93577124-93578146:+
Coord C1 exon
chr10:93577124-93577232
Coord A exon
chr10:93577615-93577853
Coord C2 exon
chr10:93577978-93578146
Length
239 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCCTTTCCCCTTAGACC
3' ss Score
12.02
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ACCAGCTGTGCGGTGATTCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGATGATCGGAGCTGCACAGAGGAGACGCACGGCTTCATCTGCCAGAAGGGCACAG
Seq A exon
ACCCCTCGCTGAGCCCATCCCCGGCAGCAGCACTCCCTGCCCCAGGCACCGAGCTCTCCTACCTCAACCGCACCTTCCGGCTGCTGCAGAAGCCACTGCGCTGGAAAGATGCTCTCCTGCTGTGTGAGAGCCGGAATGCCAGCCTGGCACACGTGCCTGATCCCTACACCCAGGCCTTCCTTACGCAGGCTGCCCGGGGGCTGCAAGCACCACTGTGGATCGGGCTGGCCAGTGAGGAG
Seq C2 exon
GGCTCAAGGCGGTATTCCTGGCTCTCGGAGGAGCCTCTGAATTATGCGAGCTGGCAAGACGGGGAGCCCCAGCACACAGGGGGCTGTGCCTATGTGGATGTGGATGGAACCTGGCGCACCACCAGCTGTGACACCAAGCTGCAGGGGGCAGTGTGTGGGGTGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548-'28-35,'28-33,29-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.100 C2=0.035
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(28.2=89.2)
A:
PF0005916=Lectin_C=PU(47.1=61.2)
C2:
PF0005916=Lectin_C=PD(51.0=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGTGCGGTGATTCTG
R:
CTCTGCTCACCCCACACACT
Band lengths:
277-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]