GgaEX7010951 @ galGal4
Exon Skipping
Gene
ENSGALG00000000461 | MRC2
Description
mannose receptor, C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr27:2422737-2423751:+
Coord C1 exon
chr27:2422737-2422845
Coord A exon
chr27:2423263-2423501
Coord C2 exon
chr27:2423583-2423751
Length
239 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCTTTGCTCCCCCAGACC
3' ss Score
10.67
5' ss Seq
GAGGTGTGA
5' ss Score
3.51
Exon sequences
Seq C1 exon
ACCAACTGCGTGGTGGTGTGGCATGGCTCACCCCCCCACTTCACGGGGCGCTGGGATGACCGGAGCTGCGTGGAGGAGAAGCACGGCTACATCTGCCAACGGAAAATAG
Seq A exon
ACCCATCCCTGAGCCCCGCACAGACGCCGTACCCCCCCTCGCCCACCGGCACCCTCTTTTACCACAACAGCACTTACCGCATCCTGCAGAAGCCCCTCAGGTGGCACGAAGCCCTGCTGCTGTGCGAGACCCTCAATGCCACCCTGGCCACCATTCCTGACCCCTACAGCCAGGCTTTCCTCACCCAGGCCGTCAGCAGCCTACGGGCTCCACTCTGGATCGGGTTGGCCAACAATGAG
Seq C2 exon
GGAGGTCGGAGCTACTCATGGCTGTCGGAGGAGAGCCTGTTCTACACCAACTGGCAGGACGGGGAGCCCCAGCAGGCTGCTGGCTGTGCCTACATGGATGTGGATGGGAGCTGGCGCACGGCTGGATGTGACACCAAGCTGCAGGGCGGCATCTGCCAGCTCCAGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000461-'22-39,'22-35,24-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(28.4=89.2)
A:
PF0005916=Lectin_C=PU(47.1=61.2)
C2:
PF0005916=Lectin_C=PD(51.0=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGCGTGGTGGTGTGG
R:
CCGACTGGAGCTGGCAGAT
Band lengths:
276-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]