MmuEX0029620 @ mm10
Exon Skipping
Gene
ENSMUSG00000020695 | Mrc2
Description
mannose receptor, C type 2 [Source:MGI Symbol;Acc:MGI:107818]
Coordinates
chr11:105346720-105347767:+
Coord C1 exon
chr11:105346720-105346828
Coord A exon
chr11:105347235-105347473
Coord C2 exon
chr11:105347599-105347767
Length
239 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCCTTTCCCTGTAGACC
3' ss Score
12.41
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
ACCAGCTGTGCGGTGATCCTGCACAGCCCCTCAGCCCACTTCACTGGCCGCTGGGATGATCGGAGCTGCACAGAGGAGACGCATGGCTTCATCTGCCAGAAGGGCACAG
Seq A exon
ACCCCTCGCTAAGCCCATCCCCAGCAGCAACACCCCCTGCCCCGGGCGCTGAGCTCTCCTATCTCAACCACACCTTCCGGCTGCTGCAGAAGCCACTGCGCTGGAAAGATGCTCTCCTGCTGTGTGAGAGCCGAAATGCCAGCCTGGCACACGTGCCCGATCCCTACACACAAGCCTTCCTCACACAGGCTGCACGGGGGCTGCAAACACCACTGTGGATCGGGCTGGCCAGTGAGGAG
Seq C2 exon
GGCTCACGGAGGTATTCCTGGCTCTCAGAGGAGCCTCTGAATTATGTGAGCTGGCAAGATGAGGAGCCCCAGCACTCGGGAGGCTGTGCCTACGTGGATGTGGATGGAACCTGGCGCACCACCAGCTGTGATACCAAGCTGCAGGGGGCAGTGTGTGGGGTGAGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020695_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.200 C2=0.018
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PD(28.2=89.2)
A:
PF0005916=Lectin_C=PU(47.1=61.2)
C2:
PF0005916=Lectin_C=PD(51.0=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTGCGGTGATCCTG
R:
CCCTGCTCACCCCACACA
Band lengths:
276-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types