HsaEX0040331 @ hg19
Exon Skipping
Gene
ENSG00000038945 | MSR1
Description
macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:7376]
Coordinates
chr8:16021574-16032809:-
Coord C1 exon
chr8:16032696-16032809
Coord A exon
chr8:16025967-16026379
Coord C2 exon
chr8:16021574-16021760
Length
413 bp
Sequences
Splice sites
3' ss Seq
ATTTTTACTTAAATATACAGCTC
3' ss Score
5.69
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATCCTAAAAACAGCCCTTCCCTTCAAGAGAAACTGAAGTCCTTCAAAGCTGCACTGATTGCCCTTTACCTCCTCGTGTTTGCAGTTCTCATCCCTCTCATTGGAATAGTGGCAG
Seq A exon
CTCAACTCCTGAAGTGGGAAACGAAGAATTGCTCAGTTAGTTCAACTAATGCAAATGATATAACTCAAAGTCTCACGGGAAAAGGAAATGACAGCGAAGAGGAAATGAGATTTCAAGAAGTCTTTATGGAACACATGAGCAACATGGAGAAGAGAATCCAGCATATTTTAGACATGGAAGCCAACCTCATGGACACAGAGCATTTCCAAAATTTCAGCATGACAACTGATCAAAGATTTAATGACATTCTTCTGCAGCTAAGTACCTTGTTTTCCTCAGTCCAGGGACATGGGAATGCAATAGATGAAATCTCCAAGTCCTTAATAAGTTTGAATACCACATTGCTTGATTTGCAGCTCAACATAGAAAATCTGAATGGCAAAATCCAAGAGAATACCTTCAAACAACAAGAG
Seq C2 exon
GAAATCAGTAAATTAGAGGAGCGTGTTTACAATGTATCAGCAGAAATTATGGCTATGAAAGAAGAACAAGTGCATTTGGAACAGGAAATAAAAGGAGAAGTGAAAGTACTGAATAACATCACTAATGATCTCAGACTGAAAGATTGGGAACATTCTCAGACCTTGAGAAATATCACTTTAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000038945-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.187 C2=0.289
Domain overlap (PFAM):
C1:
NO
A:
PF035238=Macscav_rec=WD(100=35.5),PF045827=Reo_sigmaC=PU(67.2=65.2),PF0240317=Seryl_tRNA_N=PU(51.7=32.6)
C2:
PF045827=Reo_sigmaC=PD(31.3=66.7),PF0240317=Seryl_tRNA_N=PD(46.0=63.5),PF0139113=Collagen=PU(2.6=3.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAAAACAGCCCTTCCCT
R:
TCAAGGTCTGAGAATGTTCCCA
Band lengths:
279-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)