BtaEX6106760 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002885 | MSR1
Description
Bos taurus macrophage scavenger receptor 1 (MSR1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_174113]
Coordinates
chr27:19986257-19999076:+
Coord C1 exon
chr27:19986257-19986370
Coord A exon
chr27:19992181-19992590
Coord C2 exon
chr27:19998890-19999076
Length
410 bp
Sequences
Splice sites
3' ss Seq
ATTTTTACTTAAATATGCAGCTC
3' ss Score
5.74
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATCCTAAAAATGGCCCAACTCTTCAAGAGAGGATGAAGTCTTATAAAACTGCACTGATCACCCTTTATCTCATTGTGTTTGTAGTTCTCGTGCCCATCATTGGCATAGTGGCAG
Seq A exon
CTCAGCTCCTGAAATGGGAAACGAAGAATTGCACGGTTGGCTCAGTTAATGCAGATATATCTCCAAGTCCGGAAGGCAAAGGAAATGGCAGTGAAGATGAAATGAGATTTCGAGAAGCTGTGATGGAACGCATGAGCAACATGGAAAGCAGAATCCAGTATCTTTCAGATAATGAAGCCAATCTCCTAGATGCTAAGAATTTCCAAAATTTCAGCATAACAACTGATCAAAGATTTAATGATGTTCTTTTCCAGCTAAATTCCTTACTTTCCTCCATCCAGGAACATGAGAATATCATAGGGGATATCTCCAAGTCATTAGTAGGTCTGAACACCACAGTACTTGATTTGCAGTTCAGTATTGAAACACTGAATGGCAGAGTCCAAGAGAATGCATTTAAACAACAAGAG
Seq C2 exon
GAGATGCGTAAATTAGAGGAGCGTATATACAATGCATCAGCAGAAATTAAGTCTCTAGATGAAAAACAAGTATATTTGGAACAGGAAATAAAAGGGGAAATGAAACTGTTGAATAATATCACTAATGATCTGAGGCTGAAGGATTGGGAACATTCTCAGACATTGAAAAATATCACTTTACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002885-'4-10,'4-7,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.241 C2=0.175
Domain overlap (PFAM):
C1:
NO
A:
PF045827=Reo_sigmaC=PU(68.0=73.0),PF035238=Macscav_rec=WD(100=35.8)
C2:
PF045827=Reo_sigmaC=PD(30.6=71.4),PF0139113=Collagen=PU(3.9=3.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAAAATGGCCCAACTCTTCA
R:
TCAATGTCTGAGAATGTTCCCA
Band lengths:
279-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]