RnoEX6055684 @ rn6
Exon Skipping
Gene
ENSRNOG00000012779 | Msr1
Description
macrophage scavenger receptor 1 [Source:RGD Symbol;Acc:1564316]
Coordinates
chr16:56868794-56883491:-
Coord C1 exon
chr16:56883378-56883491
Coord A exon
chr16:56874746-56875155
Coord C2 exon
chr16:56868794-56868980
Length
410 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATTTAAACATTCAGCTC
3' ss Score
5.22
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ACACTATAAATGGCTCCTCCGTTCAGGAGAAACTGAAGTCCTTCAAAGTTGCCCTCGTCGCTCTCTACCTCCTTGTGTTTGCAGTACTAATACCTGTTGTTGGAATAGTAACAG
Seq A exon
CTCAGCTTGTGAATTGGGAAATGAAGAACTGCTTAGTGGGTTCAGCTAACACAAGTGATACATCGCAAACTCTGACTGGAAAAGAAAACACCAGTAAAGCAGAAATGGGATTTACAATTGCCATGGAACGCATGAAGGCCTTGGAGGAGAGAGTCCAAAGCATTTCAGACTCAAAAGCTGGCCTTCTAGACACAGACCGCTTCCAGAACTTCAGCATGGCAACCGACCAAAGACTTAATGATCTTCTTCTGCAGTTAAATTCCTTGATTTCATCAGTCCAGGAACATGGGGAGTCCCTGGATGCAATTTCCAAGTCCTTGCAGAGTCTGAATACAACACTGCTTGATGTCCAGGTCCATACAGAAACACTGAATGTCAAAGTCCGCGAATCTACAGCAAAGCAACAGGAG
Seq C2 exon
GACATCAGTAAGTTGGAGGAACGTGTGCACAAAGTATCAGCAGAAATCCAGTCTGTGAAAGAAGAACAAGAGCATGTGGAACAGGAAGTAAAACAGGAAGTGAAAGTATTGAACAACATCACCAACGACCTCAGACTGAAGGACTGGGAACACTCACAGACGCTGAAAAATATCACCTTAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012779-'4-6,'4-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.182 C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
PF131661=AAA_13=PU(69.3=97.1),PF045827=Reo_sigmaC=PU(71.2=84.7),PF035238=Macscav_rec=WD(100=35.8),PF0076914=ERM=PU(47.7=46.0)
C2:
PF131661=AAA_13=PD(29.7=90.5),PF045827=Reo_sigmaC=PD(27.6=71.4),PF0076914=ERM=FE(47.0=100),PF0139113=Collagen=PU(3.6=3.2)
Main Skipping Isoform:
ENSRNOT00000017339fB9037
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTATAAATGGCTCCTCCGT
R:
TAAGGTGATATTTTTCAGCGTCTGTG
Band lengths:
294-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]