HsaEX0040331 @ hg38
Exon Skipping
Gene
ENSG00000038945 | MSR1
Description
macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:HGNC:7376]
Coordinates
chr8:16164065-16175300:-
Coord C1 exon
chr8:16175187-16175300
Coord A exon
chr8:16168458-16168870
Coord C2 exon
chr8:16164065-16164251
Length
413 bp
Sequences
Splice sites
3' ss Seq
ATTTTTACTTAAATATACAGCTC
3' ss Score
5.69
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATCCTAAAAACAGCCCTTCCCTTCAAGAGAAACTGAAGTCCTTCAAAGCTGCACTGATTGCCCTTTACCTCCTCGTGTTTGCAGTTCTCATCCCTCTCATTGGAATAGTGGCAG
Seq A exon
CTCAACTCCTGAAGTGGGAAACGAAGAATTGCTCAGTTAGTTCAACTAATGCAAATGATATAACTCAAAGTCTCACGGGAAAAGGAAATGACAGCGAAGAGGAAATGAGATTTCAAGAAGTCTTTATGGAACACATGAGCAACATGGAGAAGAGAATCCAGCATATTTTAGACATGGAAGCCAACCTCATGGACACAGAGCATTTCCAAAATTTCAGCATGACAACTGATCAAAGATTTAATGACATTCTTCTGCAGCTAAGTACCTTGTTTTCCTCAGTCCAGGGACATGGGAATGCAATAGATGAAATCTCCAAGTCCTTAATAAGTTTGAATACCACATTGCTTGATTTGCAGCTCAACATAGAAAATCTGAATGGCAAAATCCAAGAGAATACCTTCAAACAACAAGAG
Seq C2 exon
GAAATCAGTAAATTAGAGGAGCGTGTTTACAATGTATCAGCAGAAATTATGGCTATGAAAGAAGAACAAGTGCATTTGGAACAGGAAATAAAAGGAGAAGTGAAAGTACTGAATAACATCACTAATGATCTCAGACTGAAAGATTGGGAACATTCTCAGACCTTGAGAAATATCACTTTAATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000038945-'77-52,'77-50,78-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=0.180 C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
PF035238=Macscav_rec=WD(100=35.5),PF045827=Reo_sigmaC=PU(66.7=62.3)
C2:
PF045827=Reo_sigmaC=PD(31.8=65.1),PF0139113=Collagen=PU(3.1=3.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAAAACAGCCCTTCCCT
R:
TCAAGGTCTGAGAATGTTCCCA
Band lengths:
279-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development