HsaEX0040962 @ hg19
Exon Skipping
Gene
ENSG00000144821 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:31073]
Coordinates
chr3:108099216-108103629:-
Coord C1 exon
chr3:108103534-108103629
Coord A exon
chr3:108102442-108102576
Coord C2 exon
chr3:108099216-108100406
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTATTTTTATAGGAA
3' ss Score
11.12
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCAGAGGAAGACAAGAAGAATCTGAGCAGGATGCAAACTCAGATGGATAAACTTCAGCTAAAAGTGCAAAATTACAAGCAGCAAGTCGAGGTGGCG
Seq A exon
GAAACACAAGCCAATCAATACCTTTCCAAGTATAAGAAACAGCAACATGAGTTGAATGAAGTGAAGGAAAGGGCAGAGGTGGCAGAATCTCAAGTCAATAAACTCAAAATTAAAGCAAGAGAGTTTGGGAAAAAG
Seq C2 exon
GTTCAAGAAGAATAGCATCCCCTGCTTTGAAAGGACAACAGCTGGAGAAGTACAAGGAAGGTGCTGTTTCATGGCCAAAAACTTAGGTTGCATGGAAACATTTTTAAAAACATGTTTAAATTGCTTTTCACACCATATAAACAAGGCAATTAGAAAAATAATTAAAGGGAATATCATTGCTTCCACAGTTAATGGGGATTTTTTGATCCTCAAATGCAAGTAAACTACCTTCTAATGCTTCACATGACAGATTAAATAAATGGAAGAACCTTTTCAATTCTGATGTTTAAAAAATGAATAAATACTTGATCCTTTGTCCATATTTCCTCTTAATGGGTAGGACTCATAGAAGATGTCCTTAGACCAGTCACGCTTCATGGGGACTAGGGCATGTTGGTGAATGGTTTTTACTAAAGTTAGGCAACTTTGGCTTGATTCACCCCTAAATCTATGAATGTATATTGTGAGCCAGCAGTGGTAGAATGGAAGTCATAAGATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821-'42-42,'42-41,43-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.311 C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGATGCAAACTCAGATGGA
R:
TGTGGAAGCAATGATATTCCCT
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)