GgaEX1066222 @ galGal3
Exon Skipping
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90776484-90778482:-
Coord C1 exon
chr1:90778432-90778482
Coord A exon
chr1:90777791-90777928
Coord C2 exon
chr1:90776484-90776621
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTTTCTCTCACTAGGAA
3' ss Score
12.02
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GATAAGCTACAACTAAAAGTGAAGAGCTACAAACACCAAGCAGAGGAAGCC
Seq A exon
GAAGCACAAGCCAATCTGTACCTTTCGAAGTACAGAAAACAGCAACATGATCTGGACGATGCTGAAGAAAGGGCAGAAATAGCTGAATCTCAAGTTAACAAGCTGAGGAGCAAGTCAAGGGATATTGGCATGAAAAAG
Seq C2 exon
GTTCATGAAGAGGAGTAAGTGCGGTCCTGGCTCCCAGATATAAGATGATGATTCATACAATCAGGTATAACCAAAAGCAGATGTATTAAAACAAAACTAAAACGAGCACTTACAAAAATAAATATCAAGTGCAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358-'44-51,'44-49,45-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=0.939 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(16.0=88.9),PF0026115=Tropomyosin=PU(13.3=88.9)
A:
PF0157614=Myosin_tail_1=PD(80.0=87.0),PF0026115=Tropomyosin=FE(75.0=100)
C2:
PF0026115=Tropomyosin=PD(6.7=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACAACTAAAAGTGAAGAGCT
R:
TTGTAAGTGCTCGTTTTAGTTTTGT
Band lengths:
162-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]