MmuEX6062731 @ mm10
Exon Skipping
Gene
ENSMUSG00000092009 | Myh15
Description
myosin, heavy chain 15 [Source:MGI Symbol;Acc:MGI:3643515]
Coordinates
chr16:49195495-49199104:+
Coord C1 exon
chr16:49195495-49195590
Coord A exon
chr16:49196756-49196890
Coord C2 exon
chr16:49198528-49199104
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTTTCCATTTGACAGGAG
3' ss Score
7.51
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GCAGAGGAAGACAAGAAAAATCTGAGCAGGATGCAGGCTCTGTCTGATAAACTTCAGCTGAAGGTGCAGAGTTACAAACAGCAAGTGGAAGCAGCG
Seq A exon
GAGGCACAGGCTAATCAATACCTTTCCAAGTATAAGAAGCAGCAACATGAGCTGAATGAAGCCAAGGAGAGGGCAGAGGCCGCAGAATCGCAAGTCAATAAACTCAGAGCTAAAGCAAAGGAACTTGAGAAAAAG
Seq C2 exon
GTTCGAGAAGAATAAGGAGTTTCTCTTCATTAAAAAAAAAAAAGACAACTGGAAGCAAGCCTTTAAGAAATAAGTATGTGGCAAGAATAGCAGGCTAAGGAGATGATGAAGAAAATGTTCTGATCCAAAGGACTATAACCACCTCTTGGATTAATGGATGGCTTTTTGATTCTCAGTGGCATGAGACATCTCTCTACTACAATTTCACACAAAAGACTTAACAGATGTAAGAATCAATTTTGATGTTAGAAGCAGGCACACTTCTCCTTTCCTCCATTTCTTCATGCATAGCACTCAGAGAAGAGCCCTTAGTATATGCTTCATGGAGTCTGGTCCATGATGAGGAAGGGATATTCAAGTTATCTAACTTTGCTTAACTGGTCCCTGTATTTGGTGACAATTGACAAAAATGTCTCTTAGCACTGTGGAGCAGGCATTGCCATAGTTAGGTGCTTTGAACTTGTAGGTAGACTATCCTAATCAAGAAACATGTAGGATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092009-'35-55,'35-47,46-55=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=0.933 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGCAGGCTCTGTCTGAT
R:
TGCCACTGAGAATCAAAAAGCCA
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types