GgaEX1066222 @ galGal4
Exon Skipping
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86879998-86882040:-
Coord C1 exon
chr1:86881945-86882040
Coord A exon
chr1:86881304-86881441
Coord C2 exon
chr1:86879998-86880134
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTTTCTCTCACTAGGAA
3' ss Score
12.02
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TCAGAAGAAGATAAGAAAAATCTGGCCCGAATGCAGGATCTGATAGATAAGCTACAACTAAAAGTGAAGAGCTACAAACACCAAGCAGAGGAAGCC
Seq A exon
GAAGCACAAGCCAATCTGTACCTTTCGAAGTACAGAAAACAGCAACATGATCTGGACGATGCTGAAGAAAGGGCAGAAATAGCTGAATCTCAAGTTAACAAGCTGAGGAGCAAGTCAAGGGATATTGGCATGAAAAAG
Seq C2 exon
GTTCATGAAGAGGAGTAAGTGCGGTCCTGGCTCCCAGATATAAGATGATGATTCATACAATCAGGTATAACCAAAAGCAGATGTATTAAAACAAAACTAAAACGAGCACTTACAAAAATAAATATCAAGTGCAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358-'47-69,'47-65,49-69
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.575 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.7=100),PF0003816=Filament=FE(14.3=100)
A:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATAAGAAAAATCTGGCCCGA
R:
ATTTTTGTAAGTGCTCGTTTTAGTTT
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]