DreEX6091863 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24945111-24945828:-
Coord C1 exon
chr11:24945733-24945828
Coord A exon
chr11:24945496-24945642
Coord C2 exon
chr11:24945111-24945405
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCTGATTGTATAATTGTAGGAG
3' ss Score
5.1
5' ss Seq
AAGGCATGT
5' ss Score
2.03
Exon sequences
Seq C1 exon
ACTGAAGAGGACAGAAAGAACATTGCTCGCCTCCAGGAGCTCATAGACAAGCTACAAGCCAAAGTTAAAACCTACAAGAGACAAGCTGAAGATGCT
Seq A exon
GAGGAACAAGCTAATTCCAACTTGACCAAGTACAAGAAGATCCAGCATGAGCTGGACGACGCTGAGGAACGAGCAGATATCGCAGAGTCTCAAGTGAATAAACTACGGACCCGCTCCAGAGACTCTGGCAGTAAGACTACTCCTAAG
Seq C2 exon
CTTGCAGAGTGAAGAGGAAGGGGCCATTAACTGTGGCCACAAAACCTATGAGCAAGTTAAAGAAATCTGTATGTAGAGCATTAGAAATGGGTATATTGTATTTAACTGTACTACTAATATATACTGCAATCAGTGGTGGAAAGAGTACTGAAAAATGATACTCATGTAAAAGTACCATTAACTTGCCCCAAAATATAGTGCAAATTTGACAGGACGAGCACTGATTATTATTTACCTAATCAAAGTAATGTCAGACCAGAAAATAATCATATAGGCTAGTTTTTAGTGCAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'50-55,'50-54,52-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.980 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100),PF0003816=Filament=FE(11.0=100)
A:
PF0157614=Myosin_tail_1=PD(4.7=81.6),PF0003816=Filament=PD(12.5=71.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAGACAAGCTGAAGATGCT
R:
GCTCGTCCTGTCAAATTTGCAC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]