MmuEX0030378 @ mm10
Exon Skipping
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155633353-155634307:+
Coord C1 exon
chr2:155633353-155633448
Coord A exon
chr2:155633863-155634000
Coord C2 exon
chr2:155634080-155634307
Length
138 bp
Sequences
Splice sites
3' ss Seq
GGCTCTGCATATGGCTCCAGGAG
3' ss Score
4.48
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACTGAAGAGGACAGGAAGAACCTGGCTCGCATGCAGGACCTGGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGTCAGTTTGAGGAGGCG
Seq A exon
GAGCAGCAGGCCAGTACCAACCTGGCTAAGTACCGCAAGGCCCAGCACGAGCTGGATGATGCCGAGGAACGGGCAGACATGGCAGAGACCCAGGCCAACAAGCTGCGGGCAAGGTCCAGGGATGCCCTGGGCCCCAAG
Seq C2 exon
CACAAGGAGTGACACCCAGGCTCTGAGGAGGGATACCCCACCCCTGCGATCCTGTTGTCTCTTTCCATCTGCCACTCCACCCTCCCTGAGCCCCTGAACCCCAAATAAACACCCTGTCTGCAGCAGTAGCCACTGTCCTTATTTCTTGGGGCTAGAGGAGCTGGGAACAGAACATCATGGACAAAGTCAGGTCCACATCAGTCTTTAAAATAAAGTTCTTTAATAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-'49-48,'49-47,51-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.562 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAACCTGGCTCGCATG
R:
TGTTCTGTTCCCAGCTCCTCT
Band lengths:
257-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types