GgaEX6022736 @ galGal4
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2941703-2943386:-
Coord C1 exon
chr20:2943291-2943386
Coord A exon
chr20:2943074-2943211
Coord C2 exon
chr20:2941703-2942996
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCCTTGTGCCTCCCCACAGGAG
3' ss Score
12.12
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACTGAGGAAGACCGGAAGAACCTGACCCGGATGCAAGATCTGATTGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGCCAGTTTGAGGAGGCG
Seq A exon
GAGCAGCAGGCCAACTCCAACCTGGTGAAGTACCGCAAGGTGCAGCACGAGCTGGACGACGCTGAGGAACGAGCTGACATTGCTGAGACGCAGGTCAACAAGCTGCGTGCCCGCACCAAGGAGGTCATCACCTTCAAG
Seq C2 exon
CACGAGTAGCAGGAGCCTGGCTGCCTGTCCTGCCACCTGCTGTACCTTGGAGGCAAATGGCTGCAACAGTCACTGCCAGCTTTGCACCGAGTTAATAAATGGAGGTGTGCCAGGACCGGCTCCTTTGTGTCTGTGCTGGTACCAGGGGCTGCAGCAGGGAGGTGCAGGGGGAGCTGGGATCCCTTTCCCAGCTGGGAGCATCTTTCAGAGGCAGGCAGCAGCAAGAGGGACAGGCCTTTCCTCACCCTCCACCAGTTTGCTCCAGCTGGGAAAAAGAGTCCTCTCCTCACTCCCATCAAAAGCCCCAAGCACACACTGAGCTGGGACAGAGCAGAGCTGAGGGACAGGGCAGGGTGGAGTGCAGAACAGACCTCACCAAACCCCCTAGTCCCAGGGCCAAACATAACCATCATAAGCACAATCCTGTGCAGCACAAAGAGGTTGATCATGGCTTTGGCAAAGGGACTATGAAAGAAAAGACATCTCCACTAGTTTCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'47-49,'47-47,48-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.478 C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100),PF0003816=Filament=FE(11.9=100)
A:
PF0157614=Myosin_tail_1=PD(4.7=87.0),PF0003816=Filament=PD(16.5=93.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGCAAGGTCAAGAGC
R:
CTGAAAGATGCTCCCAGCTGG
Band lengths:
253-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]