GgaEX6022736 @ galGal3
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2584788-2585291:-
Coord C1 exon
chr20:2585196-2585291
Coord A exon
chr20:2584979-2585116
Coord C2 exon
chr20:2584788-2584901
Length
138 bp
Sequences
Splice sites
3' ss Seq
TGCCTTGTGCCTCCCCACAGGAG
3' ss Score
12.12
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACTGAGGAAGACCGGAAGAACCTGACCCGGATGCAAGATCTGATTGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGCCAGTTTGAGGAGGCG
Seq A exon
GAGCAGCAGGCCAACTCCAACCTGGTGAAGTACCGCAAGGTGCAGCACGAGCTGGACGACGCTGAGGAACGAGCTGACATTGCTGAGACGCAGGTCAACAAGCTGCGTGCCCGCACCAAGGAGGTCATCACCTTCAAG
Seq C2 exon
CACGAGTAGCAGGAGCCTGGCTGCCTGTCCTGCCACCTGCTGTACCTTGGAGGCAAATGGCTGCAACAGTCACTGCCAGCTTTGCACCGAGTTAATAAATGGAGGTGTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'51-55,'51-54,53-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.508 C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.8=100),PF0003816=Filament=FE(12.2=100),PF052669=DUF724=FE(30.7=100),PF150351=Rootletin=PU(39.7=84.4),PF127182=Tropomyosin_1=PU(39.1=84.4)
A:
PF0157614=Myosin_tail_1=PD(7.1=87.0),PF0003816=Filament=PD(16.5=93.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGGAAGACCGGAAGAAC
R:
CCTGGCACACCTCCATTTATT
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]