RnoEX6019864 @ rn6
Exon Skipping
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151149488-151150344:+
Coord C1 exon
chr3:151149488-151149583
Coord A exon
chr3:151149980-151150117
Coord C2 exon
chr3:151150197-151150344
Length
138 bp
Sequences
Splice sites
3' ss Seq
GGCCCTGCATACTCCTCTAGGAG
3' ss Score
6.96
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ACTGAGGAAGACAGGAAGAACCTGGCTCGCATGCAGGACCTAGTGGACAAGCTGCAGAGCAAGGTCAAGAGCTACAAGCGTCAGTTTGAGGAGGCG
Seq A exon
GAGCAGCAGGCCAGTACCAACCTGGCTAAGTACCGCAAGGCCCAGCACGAGTTAGACGACGCTGAGGAGCGGGCAGACATGGCAGAGACCCAGGCCAACAAGCTGCGGGCAAGGTCCAGGGATGCCCTGGGTCCCAAG
Seq C2 exon
CACAAGGAGTGAGAGACTCCAGCTCTGACGAGGGATACCCCGTGCTCCTGTTGTCTTTCCACCTGCCACTCCACAGAGCTCTGGAACCCCAAATAAACACCACATCTGCAGCAGCAGCCGCTGTCCTGTCCTTATTTCTTGCGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-'43-47,'43-46,44-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.6=100)
A:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGGAAGACAGGAAGAACC
R:
AGCCGCAAGAAATAAGGACAGG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]