HsaEX0040967 @ hg19
Exon Skipping
Gene
ENSG00000144821 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:31073]
Coordinates
chr3:108127127-108133275:-
Coord C1 exon
chr3:108133079-108133275
Coord A exon
chr3:108129430-108129779
Coord C2 exon
chr3:108127127-108127251
Length
350 bp
Sequences
Splice sites
3' ss Seq
TGGGTGTCCTCCTTTCTCAGGAA
3' ss Score
9.82
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
TCCCAGAGTGCCCTGGCCCATGCCCTGCAGAAGGCTCAGCGTGACTGTGACCTTCTACGAGAGCAGTATGAGGAAGAACAAGAGGTCAAGGCTGAGCTGCACCGGACCTTATCCAAAGTCAATGCTGAAATGGTGCAATGGAGAATGAAGTATGAAAACAATGTCATCCAGAGAACAGAAGACTTGGAGGATGCCAA
Seq A exon
GAAGGAACTGGCAATTAGATTGCAGGAGGCAGCCGAAGCCATGGGGGTGGCCAATGCCAGAAATGCCTCCTTGGAGAGAGCCAGGCACCAGCTGCAGCTGGAGCTCGGGGACGCCCTGTCTGACCTCGGGAAGGTCCGCTCTGCAGCAGCCAGGCTGGACCAGAAGCAGCTGCAGTCTGGCAAGGCCCTTGCCGACTGGAAGCAGAAGCACGAGGAGTCCCAGGCGTTGCTGGATGCCTCTCAGAAGGAAGTTCAGGCTCTCAGTACAGAGCTCCTCAAGCTCAAGAACACCTATGAGGAGAGCATCGTGGGCCAGGAGACACTCAGGAGGGAGAACAAGAACCTCCAAG
Seq C2 exon
AAGAGATTTCTAATCTGACAAACCAGGTTAGAGAAGGGACCAAGAACTTAACTGAAATGGAAAAGGTCAAGAAACTAATTGAAGAAGAGAAGACAGAAGTCCAGGTGACACTGGAAGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.297 C2=0.643
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100)
A:
PF0157614=Myosin_tail_1=FE(13.6=100),PF045827=Reo_sigmaC=PU(72.3=90.7)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(27.0=95.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGCCCTGGCCCAT
R:
TCTGTTTCTTCCAGTGTCACCTG
Band lengths:
318-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)