BtaEX6000793 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53557850-53564079:-
Coord C1 exon
chr1:53563883-53564079
Coord A exon
chr1:53560077-53560426
Coord C2 exon
chr1:53557850-53557974
Length
350 bp
Sequences
Splice sites
3' ss Seq
TTTGGGCCTCCTCTTCTCAGGAA
3' ss Score
9.58
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
TCACAGAGTGCCCTGGCCCAGGCCGTGAAGTCGGCCAAGCGTGATTGTGACCTTCTACGAGAGCAGTACGAGGAAGAGCAAGCAGCCAAGGCTGAGCTGCTGCAGGCCCTGCTCAAAGGCAATGCTGAAATGGTGAAGTGGAGGACCAAGTACGAGGATGACACCATCCAGCGTGCTGAGGACTTGGAGGATGCCAA
Seq A exon
GAAGAAGCTGGCACTTCGGTTGCAGGAGGCTGCGGAAGCCATGGGGGTGGCCAATGCCAGAAACGCCTCCCTGGAGAGGGCCAGGCTCCGACTGCAGCTTGAGCTCGGGGACACCCTGTCTGATCTCGGGCAGGCGCGGTCTGCGGCTGCCGCACTCAACCAGAAGCAGCAGCATTTTGACAAGAGCCTGGACGACTGGAGGCGGAAGCACGAGGAGTCCCAGGCGATGCTGGATGCCGCAAAAAAGGAGGCCCGCGCCCTCAGCATCCAGCTCCTGGAGCTCAGGCACAGCTACGAGGAGGGCACCATGAGCCAGGAGGCCCTGCGGAGGGAGAATAAGCACCTGAAAG
Seq C2 exon
AGGAGATTTCTAATCTGACAAATCAGGTGAGAGAAGGAAAGAAGAACTTAAGTAAAATGGAAAAGGTCAAGAAACAGATTGAACAAGAAAAGAATGAAGTTCAGATGGCATTGGAAGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399-'35-42,'35-41,36-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.390 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(28.0=68.2)
A:
PF0157614=Myosin_tail_1=FE(13.6=100),PF048997=MbeD_MobD=WD(100=46.6)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGAGTGCCCTGGCC
R:
AGCCTCTTCCAATGCCATCTG
Band lengths:
319-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]