RnoEX6056903 @ rn6
Exon Skipping
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54236894-54245041:-
Coord C1 exon
chr11:54244845-54245041
Coord A exon
chr11:54240405-54240754
Coord C2 exon
chr11:54236894-54237018
Length
350 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGGCTCTCTCCTCAGGAA
3' ss Score
11.95
5' ss Seq
AGGGTACTG
5' ss Score
4.5
Exon sequences
Seq C1 exon
TCTCAGAGTGCCCTGGCCCATGCTCTGCAGTCAACCAAGCATGACTATGACCTTCTACGAGAGCAGTATGAAGAAGAACAGGAAGTGAAGTCTGAGTTGCACCGGGCTTTATCTAAAGGCAACAAGGAAACAGTACAATGGAGAACAAAGTATGAACACGATGCTATGCAAAGAACTGAAGACTTGGAGGAAGCTAA
Seq A exon
GAAGAAGCTGGCGATTCGATTGCAGGAGGCCGCTGAAGCCATGGAGGTGTCCAATGCCAAGAATGCCTCCCTGGAGAGGGCCAGGCACAGGCTCCAGCTGGAGCTGGGGGATGCCCTTTCTGACCTGGGAAAGGCTCGCTCTGTGGCAGCAGCATTGGGGCAAAAACAGCAGCACTCTGACAAGGCTCTGGCTTCCTGGAAGCAGAAGCAGGAAGAGGCCCAGGAGCTGCTGCAGGCCTCTCAGAAGGAGGCCCGAGCTCTCAGCTCTGAGGTCCTCATGCTCAGGCAAGCCTGTGAGGAGAGCAACGAGGCCCAGGAGACCCTGAAGAGGCAGAACCAGGACCTTCAGG
Seq C2 exon
AACGGATTTGTTGTCTCACAAACCAGGTGAGAGAAGGGATCAAGAATTTGACTGAAGTGGAAAAGGCCAAGAAATTGATTGAGCAAGAGAAGACTGAAATCCAAGCGAGGCTGGAAGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038-'37-38,'37-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=0.381 C2=0.167
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100)
A:
PF0157614=Myosin_tail_1=FE(13.7=100)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGAGTGCCCTGGCC
R:
CTCTGCTTCTTCCAGCCTCG
Band lengths:
322-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]