GgaEX6003909 @ galGal3

Exon Skipping

Gene

ENSGALG00000015358 | Q91377_CHICK

Description

NA

Coordinates

chr1:90787840-90789876:-

Coord C1 exon

chr1:90789680-90789876

Coord A exon

chr1:90788707-90789056

Coord C2 exon

chr1:90787840-90787964

Length

350 bp

Sequences

Splice sites

3' ss Seq

TGTCTCTTCCCATCTGGCAGAAA

3' ss Score

7.77

5' ss Seq

AAGGTAGGC

5' ss Score

10.08

Exon sequences

Seq C1 exon

TCCAAAAATGCTCTGGCTCATGCCCTGCAAGCAGCCAGGCATGACTGTGATCTCTTGCGAGAACAGTACGAGGAGGAGCAAGAAGCCAAGGCAGAGCTGCAGCGGGCTCTCTCCAAGGGAAATGCAGAAGTGGCACAATGGAGAACAAAGTATGAAACTGATGCCATTCAGAGGACTGAGGAACTGGAAGATGCCAA

Seq A exon

AAAAAAGCTTGCTGCCCGCCTGCAAGAAGCTGAGGAAGCAATTGAAGCTGCCAACGCCAAGTGCTCTTCTCTGGAAAAGACAAAGCACAGGCTGCAGAACGAGCTGGAAGATATGATGATTGATCTGGAAAAGGCCAACTCAGCGGCTGCCTCCCTGGACAAGAAGCAGCGTGGCTTTGACAAGATCATCAATGACTGGAAGCAGAAGTATGAAGAGTCACAGGCTGAGCTGGAAGCTTCCCAGAAGGAGGCCCGCAGCCTCAGCACCGAGCTCTTCAAGCTGAAGAATGCCTATGAAGAGACACTGGACCATCTGGAGACTCTGAAACGGGAAAACAAGAACCTCCAAG

Seq C2 exon

AGGAAATTTCTGATCTGACCAATCAGATCAGTGAAGGAAACAAGAACCTCCATGAGATAGAAAAAGTCAAGAAGCAGGTAGAACAAGAAAAGTCAGAGGTTCAGCTAGCTCTGGAAGAAGCAGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000015358-'34-35,'34-34,36-35=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.530 A=0.508 C2=0.905

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(27.1=100),PF0003816=Filament=FE(21.1=100),PF078897=DUF1664=PU(19.2=22.7)

A:

PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=FE(38.9=100),PF131661=AAA_13=PD(52.9=84.7),PF078897=DUF1664=PD(79.5=52.5),PF045827=Reo_sigmaC=PU(62.8=87.3)

C2:

PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.6=100),PF045827=Reo_sigmaC=FE(25.0=100)

Main Inclusion Isoform:

ENSGALP00000024742