MmuEX6062738 @ mm9
Exon Skipping
Gene
ENSMUSG00000092009 | AC122233.1
Description
myosin, heavy chain 15 [Source:MGI Symbol;Acc:MGI:3643515]
Coordinates
chr16:49155629-49163253:+
Coord C1 exon
chr16:49155629-49155825
Coord A exon
chr16:49159772-49160121
Coord C2 exon
chr16:49163129-49163253
Length
350 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGGCTTTCTCCTCAGGAA
3' ss Score
11.38
5' ss Seq
AGGGTACTG
5' ss Score
4.5
Exon sequences
Seq C1 exon
TCTCAGAGTGCCCTGAGCCATGCCCTGCAGTCAGCCAAGCATGACTATGATCTTCTGAGAGAGCAGTATGAAGAAGAACAAGAAGTCAAGGCTGAGCTGCACCGGGCTCTATCTAAAGGCAACAAGGAAACAGTGCAGTGGAGAGCGAAGTATGAACATGATGCTATGCAGAGAACTGAAGACTTGGAGGAAGCCAA
Seq A exon
GAAGAAGCTGGCGATTCGATTGCAGGAGGCTGCAGAAGCCATGGAGGTGTCCAATGCCAAGAATGCCTCCCTGGAGCGGGCCAGGCACAGGCTCCAGCTGGAGCTGGGGGATGCCCTTTCTGACCTGGGGAAGGCTCGCTCTGTGGCAGCGGCTCTGGGGCAGAAACAGCAGCACTCTGACAAGGCACTGACTTCCTGGAAGCAGAAGCTGGACGAGACCCAAGAGCTGCTGCAGGCTTCTCAGAAGGAGACCCGGGCCCTCAGCTCTGAGGTCCTCACCTTCAGGCAAGCCTGTGAGGAGAGCACCGAGGCACAGGAGACCTTGAAGAGGCAGAACCAGGACCTTCAGG
Seq C2 exon
AACAGATTTGTAGTCTCACAAACCAGGTGAGAGAAGGGATCAAGAATTTGGCTGAAGTGGAAAAGGCCAAGAAGTTGATTGAACAAGAGAAGACTGAAGTCCAAGTGAGGCTGGAAGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092009-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.373 C2=0.143
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100)
A:
PF0157614=Myosin_tail_1=FE(13.6=100)
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGTGCCCTGAGCCATG
R:
CTCTGTTTCTTCCAGCCTCACT
Band lengths:
320-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: