HsaEX0042153 @ hg38
Exon Skipping
Gene
ENSG00000163046 | ANKRD30BL
Description
ankyrin repeat domain 30B like [Source:HGNC Symbol;Acc:HGNC:35167]
Coordinates
chr2:132150912-132154768:-
Coord C1 exon
chr2:132154662-132154768
Coord A exon
chr2:132153532-132153694
Coord C2 exon
chr2:132150912-132150976
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTATCTCTTTGTTATTTTAGCAC
3' ss Score
7.64
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
GCTGGCCACACACCACTTTTACTGGCCATAAGGAAAAGAAGTGAGGAAATTGTGGAATTTTTACTGACAAAAAATGCAAATGCAAATGCAGTTGATAAGTTTAAATG
Seq A exon
CACAGCCCTCATGCTTGCCATATGTCATGGATCATCAGAGATAGTTGGCAAGCTTCTTCAGCAAAATGTTGACATCTGTGCTGAAGCTACATGTGGAATGATTGCAGAACGTTATGCTGTTGCTTGTGGATTTAATCTCTAAGTGTTTACATTTAAAGGCTAG
Seq C2 exon
CGTTCATCAACAACTTTTGGAATATAAACAAAAGATATCTAAAAATTCTCAAAATAGTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163046_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.522
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=86.1)
A:
PF127962=Ank_2=PD(31.9=60.4)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development