Special

HsaEX0045713 @ hg19

Exon Skipping

Gene
Description
paired box 6 [Source:HGNC Symbol;Acc:8620]
Coordinates
chr11:31823109-31828010:-
Coord C1 exon
chr11:31827950-31828010
Coord A exon
chr11:31824252-31824382
Coord C2 exon
chr11:31823109-31823324
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTCCCTTTCCTCAGGTC
3' ss Score
13.5
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
AGCCCCATATTCGAGCCCCGTGGAATCCCGCGGCCCCCAGCCAGAGCCAGCATGCAGAACA
Seq A exon
GTCACAGCGGAGTGAATCAGCTCGGTGGTGTCTTTGTCAACGGGCGGCCACTGCCGGACTCCACCCGGCAGAAGATTGTAGAGCTAGCTCACAGCGGGGCCCGGCCGTGCGACATTTCCCGAATTCTGCAG
Seq C2 exon
GTGTCCAACGGATGTGTGAGTAAAATTCTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCAATCGGTGGTAGTAAACCGAGAGTAGCGACTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAGCGGGAGTGCCCGTCCATCTTTGCTTGGGAAATCCGAGACAGATTACTGTCCGAGGGGGTCTGTACCAACGATAACATACCAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007372_MULTIEX1-1/4=C1-3
Average complexity
C1
Mappability confidence:
80%=100=80%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (disopred):
  C1=0.693 A=0.101 C2=0.015
Domain overlap (PFAM):

C1:
PF0029213=PAX=PU(0.1=0.0)
A:
PF0029213=PAX=PU(34.4=97.7)
C2:
PF0029213=PAX=PU(88.0=98.6)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATATTCGAGCCCCGTGGAAT
R:
ACCCCCTCGGACAGTAATCTG
Band lengths:
247-378
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development