GgaEX1047497 @ galGal4
Exon Skipping
Gene
ENSGALG00000012123 | Pax-6
Description
Paired box protein Pax-6 [Source:UniProtKB/Swiss-Prot;Acc:P47237]
Coordinates
chr5:5225498-5228778:-
Coord C1 exon
chr5:5228724-5228778
Coord A exon
chr5:5227190-5227320
Coord C2 exon
chr5:5225498-5225663
Length
131 bp
Sequences
Splice sites
3' ss Seq
GGGCGCTGTGCTTCCCGCAGGTC
3' ss Score
9.84
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
ACCGCTCCAGGCGAGCCCCGCGGGACCCCGCTGCCCCGGCCCACCATGCAGAACA
Seq A exon
GTCACAGCGGCGTGAACCAGCTCGGCGGGGTGTTCGTCAACGGGAGGCCGCTGCCCGACTCCACGCGGCAGAAGATCGTGGAACTCGCGCACAGCGGCGCGCGGCCGTGCGACATCTCCCGAATCCTGCAG
Seq C2 exon
GTGTCGTCGATAAACAGAGTCCTCCGCAACCTGGCTAGCGAAAAGCAACAGATGGGTGCCGACGGGATGTACGACAAGCTAAGGATGCTGAACGGGCAGACGGGGACATGGGGCACCCGGCCCGGCTGGTATCCCGGCACCTCGGTACCCGGGCAGCCCGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012123_MULTIEX2-5/7=4-C2
Average complexity
C3*
Mappability confidence:
75%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.727 C2=0.804
Domain overlap (PFAM):
C1:
PF0029213=PAX=PU(0.1=0.0)
A:
PF0029213=PAX=PU(30.9=97.7)
C2:
PF0029213=PAX=PD(5.8=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCACCATGCAGAAC
R:
CCATGTCCCCGTCTGCCC
Band lengths:
130-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]