DreEX6101582 @ danRer10
Exon Skipping
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14942831-14945330:-
Coord C1 exon
chr25:14945307-14945330
Coord A exon
chr25:14943183-14943313
Coord C2 exon
chr25:14942831-14942872
Length
131 bp
Sequences
Splice sites
3' ss Seq
CAACATATTTCTTTTTTTAGGTC
3' ss Score
10.09
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGGTGTATGACATCTGTAACGAAG
Seq A exon
GTCACAGTGGAGTGAACCAGCTCGGCGGTGTGTTCGTCAACGGCAGACCGCTACCCGACTCCACGAGACAGAAAATAGTTGAACTCGCACACAGTGGCGCGCGGCCGTGTGACATATCAAGAATTCTGCAG
Seq C2 exon
ACCCATGCTGATGCAAAAGTCCAAGTGCTGGACAATGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379-'8-15,'8-13,11-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.667 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
PF0029213=PAX=PU(0.1=0.0)
A:
PF0029213=PAX=PU(34.4=97.7)
C2:
PF0029213=PAX=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]