MmuEX0033803 @ mm10
Exon Skipping
Gene
ENSMUSG00000027168 | Pax6
Description
paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105680247-105684792:+
Coord C1 exon
chr2:105680247-105680307
Coord A exon
chr2:105683828-105683958
Coord C2 exon
chr2:105684751-105684792
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCGTCCTTTCCTCAGGTC
3' ss Score
11.96
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
AGCCCCGTATTCGAGCCCCGTGGGATCCGGAGGCTGCCAACCAGCTCCAGCATGCAGAACA
Seq A exon
GTCACAGCGGAGTGAATCAGCTTGGTGGTGTCTTTGTCAACGGGCGGCCACTGCCGGACTCCACCCGGCAGAAGATCGTAGAGCTAGCTCACAGCGGGGCCCGGCCGTGCGACATTTCCCGAATTCTGCAG
Seq C2 exon
ACCCATGCAGATGCAAAAGTCCAGGTGCTGGACAATGAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168-'15-23,'15-22,24-23
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.575 C2=0.000
Domain overlap (PFAM):
C1:
PF0029213=PAX=PU(0.1=0.0)
A:
PF0029213=PAX=PU(30.9=97.7)
C2:
PF0029213=PAX=FE(9.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTATTCGAGCCCCGT
R:
GTTTTCATTGTCCAGCACCTG
Band lengths:
100-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types