HsaEX0050673 @ hg38
Exon Skipping
Gene
ENSG00000121390 | PSPC1
Description
paraspeckle component 1 [Source:HGNC Symbol;Acc:HGNC:20320]
Coordinates
chr13:19677724-19730344:-
Coord C1 exon
chr13:19730239-19730344
Coord A exon
chr13:19699380-19699398
Coord C2 exon
chr13:19677724-19677823
Length
19 bp
Sequences
Splice sites
3' ss Seq
TCTGGTGGTGTAAAATGAAGTAT
3' ss Score
-1.64
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ACATGAAGAGGAGCATCGGCGGCGTGAGGAAGAAATGATCCGACACAGAGAACAGGAGGAACTGAGGCGACAGCAAGAGGGCTTTAAGCCAAACTACATGGAAAAT
Seq A exon
TATGTCTGCCATTTCCTAA
Seq C2 exon
GGTGATAAAAGAAAATGTGGCTGAAGTTACCCGAAGTTCAGCTTGCAGTGTAATTCAGAAGAGTTAAGACCAGAAGTACTGGAATCATACTTCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121390_MULTIEX2-9/9=4-C2
Average complexity
C1
Mappability confidence:
100%=78=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.951 A=0.000 C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACACAGAGAACAGGAGGA
R:
CTGCAAGCTGAACTTCGGGTA
Band lengths:
115-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development