HsaEX1029839 @ hg38
Exon Skipping
Gene
ENSG00000121390 | PSPC1
Description
paraspeckle component 1 [Source:HGNC Symbol;Acc:HGNC:20320]
Coordinates
chr13:19709542-19730344:-
Coord C1 exon
chr13:19730239-19730344
Coord A exon
chr13:19728365-19728385
Coord C2 exon
chr13:19709542-19709599
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTCTTTATTTCACTGTTCAGTTT
3' ss Score
7.54
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
ACATGAAGAGGAGCATCGGCGGCGTGAGGAAGAAATGATCCGACACAGAGAACAGGAGGAACTGAGGCGACAGCAAGAGGGCTTTAAGCCAAACTACATGGAAAAT
Seq A exon
TTTAAAGGGAGGAATCAAATG
Seq C2 exon
AGAGAACAGGAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121390_MULTIEX2-5/9=4-7
Average complexity
C2
Mappability confidence:
100%=100=80%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000619300fB23612
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGGAGGAACTGAGGCGA
R:
TGTTTATTGCTCCACGGGGAC
Band lengths:
109-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains