HsaEX0052380 @ hg19
Exon Skipping
Gene
ENSG00000170667 | RASA4B
Description
RAS p21 protein activator 4B [Source:HGNC Symbol;Acc:35202]
Coordinates
chr7:102141543-102150107:-
Coord C1 exon
chr7:102150046-102150107
Coord A exon
chr7:102147142-102147271
Coord C2 exon
chr7:102141543-102141674
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGGCTGAGCTGACCCCACAGGTT
3' ss Score
4.47
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG
Seq A exon
GTTTCAGCGGGTGGGCCCACCTGACAGAGGTCGACCCCGACGAGGAGGTGCAGGGCGAGATCCACCTGCGGCTGGAAGTGTGGCCAGGGGCCCGGGCCTGCCGGCTACGCTGCTCTGTGCTGGAGGCCAG
Seq C2 exon
ATCGTGAAGAAGTCATGCTACCCACGCTGGAATGAGACGTTTGAATTTGAGCTGCAGGAGGGGGCCATGGAGGCGCTGTGCGTGGAGGCCTGGGACTGGGACCTTGTCAGCCGAAACGACTTCCTGGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170667_MULTIEX4-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
PF0016825=C2=PU(9.8=18.2)
C2:
PF0016825=C2=FE(52.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTATCGGAAAGGTCTGCC
R:
TTTGCCCAGGAAGTCGTTTCG
Band lengths:
186-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)