RnoEX6063929 @ rn6
Exon Skipping
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23612704-23616850:-
Coord C1 exon
chr12:23616789-23616850
Coord A exon
chr12:23615549-23615678
Coord C2 exon
chr12:23612704-23612785
Length
130 bp
Sequences
Splice sites
3' ss Seq
GCTGACATGAAGCCCTGCAGGAT
3' ss Score
-1.86
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCGGGACGATGTGATCGGGAAGGTCTGCCTCACAAGGGATGAGCTAACCTCTCACCCAAAGG
Seq A exon
GATTCATCGGATGGACCCACCTGGTGGAGGTGGACCCGAACGAGGAGGTGCAGGGTGAGATCCACCTGCGTCTGGAGGTGGTGCCAGGGCTCCACGCCAGCCGGCTGCGCTGCTCTGTGCTTGAGGCCAG
Seq C2 exon
GGACTTAGCACCAAAAGACCGGAATGGCGCATCTGACCCTTTTGTCCGAGTGCACTACAATGGCCGGACCCAGGAGACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
PF0016825=C2=PU(9.8=18.2)
C2:
PF0016825=C2=FE(32.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGATCGGGAAGGTCTGC
R:
CGAGGTCTCCTGGGTCCG
Band lengths:
137-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]