BtaEX0000205 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35071453-35074694:+
Coord C1 exon
chr25:35071453-35071514
Coord A exon
chr25:35072630-35072759
Coord C2 exon
chr25:35074613-35074694
Length
130 bp
Sequences
Splice sites
3' ss Seq
GCTGAGCTGAGGCCCCTCAGGTT
3' ss Score
-3.15
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCGGGATGATGTCATTGGGAAGGTCTGCCTTACCAGGGACACGCTGGCCGCTCACCCTAAGG
Seq A exon
GTTTCAGTGGGTGGGCCCACCTGACCGAGGTCGACCCTGATGAGGAGGTGCAAGGTGAGATCCACCTGCGGCTGGAGGTGGTGCCAGGGACCCGGGCCTGCAGGCTGCGCTGCTCTGTGCTGGAGGCCAG
Seq C2 exon
GGACCTCGCCCCCAAGGACCGGAATGGCGCATCTGACCCCTTTGTCCGAGTGCGATACAACGGCCGCACGCAGGAGACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448-'6-8,'6-6,7-8
Average complexity
S
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
PF0016825=C2=PU(9.8=18.2)
C2:
PF0016825=C2=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGATGATGTCATTGGGAA
R:
GAGGTCTCCTGCGTGCGG
Band lengths:
143-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development