HsaEX1030691 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr7:102600257-102608822:-
Coord C1 exon
chr7:102608761-102608822
Coord A exon
chr7:102605858-102605987
Coord C2 exon
chr7:102600257-102600388
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGGCTGAGCTGACCCCACAGGTT
3' ss Score
4.47
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CCGGGACGACGTTATCGGAAAGGTCTGCCTTACAAGGGACACCATAGCCTCTCACCCTAAGG
Seq A exon
GTTTCAGCGGGTGGGCCCACCTGACGGAGGTCGACCCCGATGAGGAGGTGCAGGGCGAGATCCACCTGCGGCTGGAAGTGTGGCCAGGGGCCCGGGCCTGCCGGCTACGCTGCTCTGTGCTGGAGGCCAG
Seq C2 exon
ATCGTGAAGAAGTCATGCTACCCACGCTGGAATGAGACGTTTGAATTTGAGCTGCAGGAGGGGGCCATGGAGGCGCTGTGCGTGGAGGCCTGGGACTGGGACCTTGTCAGCCGAAACGACTTCCTGGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105808_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(11.0=40.9)
A:
PF0016825=C2=PU(22.2=18.2)
C2:
PF0016825=C2=FE(52.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTTATCGGAAAGGTCTGCC
R:
TTTGCCCAGGAAGTCGTTTCG
Band lengths:
186-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains