HsaEX0053845 @ hg19
Exon Skipping
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:12968]
Coordinates
chr17:19315811-19316724:+
Coord C1 exon
chr17:19315811-19316096
Coord A exon
chr17:19316251-19316457
Coord C2 exon
chr17:19316593-19316724
Length
207 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTTCTCCTGGCCCAGGAG
3' ss Score
6.97
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTCCCATACACCTTTCCCCAAGTTGGAGCTAGGCCTGGGGCCCCAGCCCATGGCGCCCCGGGAGCTCCCTACCTGCTCCATCTGCCTGGAGAGGTTGCGCGACCCCATCTCGCTGGACTGTGGCCACGACTTCTGCATACGGTGCTTCAGCACACACCGTCTCCCGGGCTGTGAGCCGCCCTGCTGTCCTGAGTGCCGGAAGATATGCAAGCAGAAGAGGGGCCTCCGGAGCCTGGGCGAGAAGATGAAGCTCCTGCCGCAGCGGCCGCTGCCCCCTGCACTGCAG
Seq A exon
GAGACGTGTCCTGTGAGGGCGGAGCCGCTGCTGCTGGTTCGCATCAATGCCTCTGGGGGCCTCATCCTTAGGATGGGGGCCATCAACCGCTGCCTGAAGCACCCTCTGGCCAGGGACACCCCAGTCTGCCTCCTCGCTGTCCTGGGGGAGCAGCACTCAGGGAAGTCCTTCCTCCTCAACCATTTGCTTCAGGGCTTGCCGGGCCTG
Seq C2 exon
GAGTCTGGTGAGGGCGGCCGGCCAAGAGGAGGAGAGGCATCCCTGCAGGGCTGCAGGTGGGGCGCCAATGGCCTCGCCAGGGGCATATGGATGTGGAGCCACCCCTTCTTGCTGGGGAAAGAAGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=44.1)
A:
PF0226314=GBP=PU(19.0=69.6)
C2:
PF0226314=GBP=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGACTTCTGCATACGGTG
R:
TCTTCCCTTCTTTCCCCAGCA
Band lengths:
293-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)