MmuEX6086026 @ mm10
Exon Skipping
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61451744-61452913:-
Coord C1 exon
chr11:61452628-61452913
Coord A exon
chr11:61452260-61452466
Coord C2 exon
chr11:61451744-61451848
Length
207 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTGTCCCACCCAGGAG
3' ss Score
8.97
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTCTGGAAAGGCTTCGAGAGCCCATCTCGCTGGACTGTGGCCATGACTTCTGCATCCGATGCTTCAGCACACACCGCATCCCAGGCTGTGAGCTACCATGCTGTCCTGAATGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGATGAAACTCCTACCACAGCGGCCACTGCCCCCTGCACTGCAG
Seq A exon
GAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTGGTACGAATCAATGCCTCCGGAGGCCTCATCCTCAGGATGGGCGCCATAAACCGTTGCCTGAAGCATCCACTGGCCAGGGACACACCCGTCTGCTTATTGGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTTACCAAGCCTG
Seq C2 exon
GTGGCTGTGTTCTTAGTGGACACGGGGGATGTCATGAGCCCAGAACTGAGCAAGGAGACAAGGGTCAAGCTCTGTGCTCTCACCATGATGCTCAGTTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086_MULTIEX1-3/4=2-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=47.9)
A:
PF0226314=GBP=PU(19.0=69.6)
C2:
PF0226314=GBP=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATCATTCCCCAAGCTGG
R:
CCCCGTGTCCACTAAGAACAC
Band lengths:
308-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types