RnoEX0076201 @ rn6
Exon Skipping
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47722646-47723518:-
Coord C1 exon
chr10:47723233-47723518
Coord A exon
chr10:47722883-47723089
Coord C2 exon
chr10:47722646-47722774
Length
207 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCTGTCCTGCCCAGGAG
3' ss Score
9.52
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACAGCGTCCCTCCCCACCCCGGGAGTCGCCTACCTGCTCCATCTGTCTGGAAAGGCTTCGAGAGCCTATCTCACTGGACTGTGGCCACGACTTCTGCATCCGATGCTTCAGCACACATCGCATCCCAGGCTGTGAGCTGCCATGCTGTCCTGAATGCCGGAAAATCTGTAAGCAAAAGAAGGGCCTTCGCAGTCTAGGGGAGAGGATGAAGCTCCTACCTCAGCGGCCGCTGCCCCCTGCACTGCAG
Seq A exon
GAGACCTGTGCTGTGAGAGCGGAGCGTCTGCTGTTGGTACGCATCAATGCCTCTGGAGGCCTCATCCTCAGGATGGGAGCCATAAACCGCTGCCTGAAGCACCCTCTGGCCAGGGACACACCTGTCTGCTTGCTTGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTCTTGGACCACTTGCTCAGAGGCTTACCAGGCCTG
Seq C2 exon
GAATCCGGAGACAGCACTAGGCCCAGAGCAGAGGGGTCTCTGCCTGGAATCAGATGGGGTGCTAATGGTCTCACGAGGGGCATCTGGATGTGGAGTCACCCCTTCCTGCTGGGAAAAGAAGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364-'11-12,'11-10,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.209
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=42.7)
A:
PF0226314=GBP=PU(18.9=69.6)
C2:
PF0226314=GBP=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATCTGTCTGGAAAGGC
R:
ATGCCCCTCGTGAGACCATTA
Band lengths:
295-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]