MmuEX6086026 @ mm9
Exon Skipping
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61265515-61266415:-
Coord C1 exon
chr11:61266130-61266415
Coord A exon
chr11:61265762-61265968
Coord C2 exon
chr11:61265515-61265643
Length
207 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTGTCCCACCCAGGAG
3' ss Score
8.97
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GTCCCATGCATCATTCCCCAAGCTGGAGCTGGGCCTGGGACACCGTCCCTCCCCAACCCGGGAGCCGCCCACCTGCTCCATCTGTCTGGAAAGGCTTCGAGAGCCCATCTCGCTGGACTGTGGCCATGACTTCTGCATCCGATGCTTCAGCACACACCGCATCCCAGGCTGTGAGCTACCATGCTGTCCTGAATGCCGGAAGATCTGTAAGCAAAGGAAGGGCCTCCGCAGTCTAGGGGAAAGGATGAAACTCCTACCACAGCGGCCACTGCCCCCTGCACTGCAG
Seq A exon
GAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTGGTACGAATCAATGCCTCCGGAGGCCTCATCCTCAGGATGGGCGCCATAAACCGTTGCCTGAAGCATCCACTGGCCAGGGACACACCCGTCTGCTTATTGGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTTACCAAGCCTG
Seq C2 exon
GAATCTGGTGACAGCGGCAGGCCCAGAGCAGAGGGGTCTCTGCCTGGGATCAGATGGGGCGCTAACGGCCTCACGAGGGGTATCTGGATGTGGAGTCACCCCTTCCTGCTGGGAAAAGAGGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.110
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=WD(100=47.9)
A:
PF0226314=GBP=PU(17.3=69.6)
C2:
PF0226314=GBP=FE(15.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATCTGTCTGGAAAGGC
R:
CCACATCCAGATACCCCTCGT
Band lengths:
305-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: