HsaEX0062734 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr19:7638124-7639100:+
Coord C1 exon
chr19:7638124-7638224
Coord A exon
chr19:7638726-7638775
Coord C2 exon
chr19:7639019-7639100
Length
50 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCCCTTCCCTGCAGAAA
3' ss Score
12.98
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
TAGATGATCCCGGTTCTCCTCTTTTCATTCACCTAAAACATGTTTATCGAGTGGCACCTTTTGCCCCAGCACTCTGCCACTTAGACACTCAGGATGCGTAG
Seq A exon
AAATTCTGAGCGGAGTTATTCGGAGTGTCAAGAAGGATGGGGAGTGGAAG
Seq C2 exon
GTGCTTATCATGGATCACCCAAGCATGCGCATCTTGTCTTCCTGCTGCAAAATGTCAGATATCCTGGCTGAGGGCATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000268400-'9-14,'9-13,10-14
Average complexity
S
Mappability confidence:
0%=0=0%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF098034=DUF2346=PD(4.2=50.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATCCCGGTTCTCCTCT
R:
GGAAGACAAGATGCGCATGCT
Band lengths:
142-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development