HsaEX0062734 @ hg19
Exon Skipping
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:11445]
Coordinates
chr19:7701991-7703986:+
Coord C1 exon
chr19:7701991-7702072
Coord A exon
chr19:7703612-7703661
Coord C2 exon
chr19:7703905-7703986
Length
50 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCCCTTCCCTGCAGAAA
3' ss Score
12.98
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ACCTTGGGACACACCCGGAAGCGGCGGCGGCGCCCCTCGGGGAAGATGGCGCCCTCGGGGCTGAAGGCGGTGGTGGGGGAAA
Seq A exon
AAATTCTGAGCGGAGTTATTCGGAGTGTCAAGAAGGATGGGGAGTGGAAG
Seq C2 exon
GTGCTTATCATGGATCACCCAAGCATGCGCATCTTGTCTTCCTGCTGCAAAATGTCAGATATCCTGGCTGAGGGCATCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0099518=Sec1=PU(0.2=5.9)
C2:
PF0099518=Sec1=FE(87.1=100),PF0099518=Sec1=PU(1.7=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAAGATGGCGCCCTC
R:
GGTGATGCCCTCAGCCAGG
Band lengths:
125-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)