RnoEX0087372 @ rn6
Exon Skipping
Gene
ENSRNOG00000000994 | Stxbp2
Description
syntaxin binding protein 2 [Source:RGD Symbol;Acc:619967]
Coordinates
chr12:2180150-2182196:+
Coord C1 exon
chr12:2180150-2180192
Coord A exon
chr12:2181180-2181229
Coord C2 exon
chr12:2182120-2182196
Length
50 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCTCTTCCCTGTAGAAA
3' ss Score
11.77
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGGAAGATGGCGCCCTTGGGGCTGAAGGCGGTGGTGGGGGAAA
Seq A exon
AAATTCTAAGTGGAGTCATCCGGAGCGTTAAGAAGGATGGCGAGTGGAAG
Seq C2 exon
TTGTGGAAGACATCAACAAACGGAGAGAACCCATTCCCAGCTTGGAGGCAATTTATTTGCTGAGTCCCACAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000994_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0099518=Sec1=PU(0.2=5.9)
C2:
PF0099518=Sec1=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGATGGCGCCCTTGGG
R:
TGTGGGACTCAGCAAATAAATTG
Band lengths:
112-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]