DreEX6019017 @ danRer10
Exon Skipping
Gene
ENSDARG00000007603 | stxbp2
Description
syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
Coordinates
chr3:52985899-52989143:+
Coord C1 exon
chr3:52985899-52985953
Coord A exon
chr3:52988913-52988962
Coord C2 exon
chr3:52989062-52989143
Length
50 bp
Sequences
Splice sites
3' ss Seq
TTGGTGCCTTTTGTTTGTAGAAA
3' ss Score
7.81
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CAACAGGGAAGTGTCAAGATGGCCCCGAGTGGACTAAAAGCGATCGCGAACGAAA
Seq A exon
AAATCCTCAGTGGAGTCATCAAGAGTGTGAAGAAAGATGGGGACTGGAAG
Seq C2 exon
GTGCTCATCGTTGATCATATCAGTATGCGGATTCTGTCCTCGTGCTGTAAAATGTCTGACATCATGGCAGAGGGTGTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007603-'1-1,'1-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0099518=Sec1=PU(0.2=5.9)
C2:
PF0099518=Sec1=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAAGTGTCAAGATGGCC
R:
GTAACACCCTCTGCCATGATGT
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]